CRISPR technology can speed up crop improvement

Plant breeders say the new gene-editing technology can control specific traits

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CRISPR-CAS wheat
Eduard Akhunov, Kansas State professor of wheat genetics and pathology, is leading gene-editing research to improve wheat. Using CRISPR-Cas9, researchers can selectively modify any part of a genome to improve genes controlling major agronomic traits. (K-State photo)

MANHATTAN, Kan. — Researchers say their work to improve genes in wheat varieties using a gene-editing technology is another positive step toward global food security.

“Food security and the food supply is one of the main issues in the world’s future,” said Eduard Akhunov, Kansas State University professor of wheat genetics and pathology. “With the increasing population size and a decline in the amount of land available for growing crops, we really need to intensify agriculture in a sustainable way.”

Akhunov and his colleagues are working with gene editing, a technology developed five years ago which can be used to modify with high precision any gene in a living organism.

CRISPR-Cas9 technology, introduced in 2012, is a simple yet powerful tool for editing genomes, the complete set of genetic material present in a cell. Akhunov said it allows researchers to easily change DNA sequences, creating new variants of a gene with improved properties, or fix known defects in a gene.

What is CRISPR-Cas9?

CRISPR stands for clustered regularly interspaced short palindromic repeats. It’s a relatively new and revolutionary way to modify an organism’s genome by precisely delivering a DNA-cutting enzyme — Cas9 — to a targeted region of DNA. The resulting modification can delete or replace specific DNA pieces, thereby promoting or disabling certain traits.

CRISPR-Cas9: Molecular ‘scissors’

“You can consider CRISPR-Cas9 to be like molecular scissors that can make changes very precisely in a particular place of the genome,” Akhunov said.

“Using this tool, you can selectively modify any part of a genome to improve genes controlling major agronomic traits.”

Speeds up plant breeding research

This same process is done in traditional wheat breeding, he added, but it often takes as many as 7-10 years to effect the improvements that CRISPR technology can enact in a much shorter time.

“Traditional breeding involves screening existing germplasm (genetic material) collections for genetic variation that is useful, and then introducing it into wheat varieties to improve a trait,” Akhunov said.

This process can be time-consuming and may fail if the specific genetic variation is not present in the screened germplasm, he added.

“CRISPR-Cas9 technology can use the knowledge we have already collected about the gene’s biology to introduce changes into the functionally important regions of a gene. These new variants of a gene can bring new traits, broadening the useful genetic variation that currently exists in the germplasm collections.”

Crop yield-related traits

Akhunov noted that K-State researchers work with a suite of 25 genes controlling traits that have the potential to affect yield. Using CRISPR-Cas9 technology, they have the ability to improve each of these genes before testing them in the greenhouse, and eventually evaluating them in field conditions.

“Once we identify genes that beneficially affect yield-related traits in wheat, we will work with wheat breeders to transfer these gene-editing advances to top varieties grown here in Kansas, and other U.S. breeding programs,” he said.

To achieve this, the K-State scientists will cross a wheat line containing a CRISPR-Cas9 enzyme with wheat cultivars that do not contain the enzyme.

“In the progeny (or offspring) of this cross, we select only those plants that do not have the CRISPR-Cas9 enzyme, but carry the change in the genome that we wanted to induce,” Akhunov said.

Thus, he added, nothing new is added to the resulting wheat variety, only an improvement in the performance of the wheat’s genes.

“The same outcome can happen due to natural mutations (in wheat varieties) over time, but we are accelerating this process, using CRISPR-Cas9, that can induce mutations in one specific place in the genome,” Akhunov said.

Gene by gene

Specific to wheat, Kansas State scientists are working to improve genes that control several yield component traits, among them seed size, number of seeds per spike and the number of tillers per plant.

“We systematically go gene by gene, modifying them using the CRISPR-Cas9 system and then we test to find out which changes in the wheat genome result in increased yield,” Akhunov said.

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Related articles:

Syngenta obtains gene-editing technology – November 9, 2017

Gene-edited mushroom wins Penn State developer wins ‘Best of What’s New’ award – November 10, 2016

DuPont Pioneer scientists demonstrating potential of CRISPR-Cas for agriculture – September 15, 2016

CRISPR mushroom created at Penn State a GMO game-changer – April 22, 2016

DuPont Pioneer unveils its first CRISPR product – April 21, 2016

 

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